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Hudson, André O (Ed.)ABSTRACT The fungal genusNeonectriacontains many phytopathogenic species currently impacting forests and fruit trees worldwide. Despite their importance, a majority ofNeonectriaspp. lack sufficient genomic resources to resolve suspected cryptic species. Here, we report draft genomes and assemblies forNeonectria magnoliaeNRRL 64651 andNeonectria puniceaNRRL 64653.more » « lessFree, publicly-accessible full text available November 27, 2025
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Gibbons, Sean M (Ed.)ABSTRACT Disturbance events can impact ecological community dynamics. Understanding how communities respond to disturbances and how those responses can vary is a challenge in microbial ecology. In this study, we grew a previously enriched specialized microbial community on either cellulose or glucose as a sole carbon source and subjected them to one of five different disturbance regimes of varying frequencies ranging from low to high. Using 16S rRNA gene amplicon sequencing, we show that the community structure is largely driven by substrate, but disturbance frequency affects community composition and successional dynamics. When grown on cellulose, bacteria in the generaCellvibrio,Lacunisphaera, andAsticcacaulisare the most abundant microbes. However,Lacunisphaerais only abundant in the lower disturbance frequency treatments, whileAsticcacaulisis more abundant in the highest disturbance frequency treatment. When grown on glucose, the most abundant microbes are twoPseudomonassequence variants and aCohnellasequence variant that is only abundant in the highest disturbance frequency treatment. Communities grown on cellulose exhibited a greater range of diversity (1.95–7.33 Hill 1 diversity) that peaks at the intermediate disturbance frequency treatment or one disturbance every 3 days. Communities grown on glucose, however, ranged from 1.63 to 5.19 Hill 1 diversity with peak diversity at the greatest disturbance frequency treatment. These results demonstrate that the dynamics of a microbial community can vary depending on substrate and the disturbance frequency and may potentially explain the variety of diversity–disturbance relationships observed in microbial systems. IMPORTANCEA generalizable diversity–disturbance relationship (DDR) of microbial communities remains a contentious topic. Various microbial systems have different DDRs. Rather than finding support or refuting specific DDRs, we investigated the underlying factors that lead to different DDRs. In this study, we measured a cellulose-enriched microbial community’s response to a range of disturbance frequencies from high to low, across two different substrates: cellulose and glucose. We demonstrate that the community displays a unimodal DDR when grown on cellulose and a monotonically increasing DDR when grown on glucose. Our findings suggest that the same community can display different DDRs. These results suggest that the range of DDRs we observe across different microbial systems may be due to the nutritional resources microbial communities can access and the interactions between bacteria and their environment.more » « less
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We used the 138Baðd; αÞ reaction to carry out an in-depth study of states in 136Cs, up to around 2.5 MeV. In this Letter, we place emphasis on hitherto unobserved states below the first 1þ level, which are important in the context of solar neutrino and fermionic dark matter (FDM) detection in large-scale xenon-based experiments. We identify for the first time candidate metastable states in 136Cs, which would allow a realtime detection of solar neutrino and FDM events in xenon detectors, with high background suppression. Our results are also compared with shell-model calculations performed with three Hamiltonians that were previously used to evaluate the nuclear matrix element (NME) for 136Xe neutrinoless double beta decay.We find that one of these Hamiltonians, which also systematically underestimates the NME compared with the others, dramatically fails to describe the observed low-energy 136Cs spectrum, while the other two show reasonably good agreement.more » « less
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Abstract We present analysis using a citizen science campaign to improve the cosmological measures from the Hobby–Eberly Telescope Dark Energy Experiment (HETDEX). The goal of HETDEX is to measure the Hubble expansion rate,H(z), and angular diameter distance,DA(z), atz= 2.4, each to percent-level accuracy. This accuracy is determined primarily from the total number of detected Lyαemitters (LAEs), the false positive rate due to noise, and the contamination due to [Oii] emitting galaxies. This paper presents the citizen science project, Dark Energy Explorers (https://www.zooniverse.org/projects/erinmc/dark-energy-explorers), with the goal of increasing the number of LAEs and decreasing the number of false positives due to noise and the [Oii] galaxies. Initial analysis shows that citizen science is an efficient and effective tool for classification most accurately done by the human eye, especially in combination with unsupervised machine learning. Three aspects from the citizen science campaign that have the most impact are (1) identifying individual problems with detections, (2) providing a clean sample with 100% visual identification above a signal-to-noise cut, and (3) providing labels for machine-learning efforts. Since the end of 2022, Dark Energy Explorers has collected over three and a half million classifications by 11,000 volunteers in over 85 different countries around the world. By incorporating the results of the Dark Energy Explorers, we expect to improve the accuracy on theDA(z) andH(z) parameters atz= 2.″4 by 10%–30%. While the primary goal is to improve on HETDEX, Dark Energy Explorers has already proven to be a uniquely powerful tool for science advancement and increasing accessibility to science worldwide.more » « less
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Abstract The Hobby–Eberly Telescope Dark Energy Experiment (HETDEX) is an untargeted spectroscopic survey that aims to measure the expansion rate of the universe at z ∼ 2.4 to 1% precision for both H ( z ) and D A ( z ). HETDEX is in the process of mapping in excess of one million Ly α emitting (LAE) galaxies and a similar number of lower- z galaxies as a tracer of the large-scale structure. The success of the measurement is predicated on the post-observation separation of galaxies with Ly α emission from the lower- z interloping galaxies, primarily [O ii ], with low contamination and high recovery rates. The Emission Line eXplorer (ELiXer) is the principal classification tool for HETDEX, providing a tunable balance between contamination and completeness as dictated by science needs. By combining multiple selection criteria, ELiXer improves upon the 20 Å rest-frame equivalent width cut commonly used to distinguish LAEs from lower- z [O ii ] emitting galaxies. Despite a spectral resolving power, R ∼ 800, that cannot resolve the [O ii ] doublet, we demonstrate the ability to distinguish LAEs from foreground galaxies with 98.1% accuracy. We estimate a contamination rate of Ly α by [O ii ] of 1.2% and a Ly α recovery rate of 99.1% using the default ELiXer configuration. These rates meet the HETDEX science requirements.more » « less
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Abstract The Hobby–Eberly Telescope Dark Energy Experiment (HETDEX) is designed to detect and measure the redshifts of more than 1 million Lyαemitting galaxies (LAEs) 1.88 <z< 3.52. In addition to its cosmological measurements, these data enable studies of Lyαspectral profiles and the underlying radiative transfer. Using the roughly half a million LAEs in the HETDEX Data Release 3, we stack various subsets to obtain the typical Lyαprofile for thez∼ 2–3 epoch and to understand their physical properties. We find clear absorption wings around Lyαemission, which extend ∼2000 km s−1both redward and blueward of the central line. Using far-UV spectra of nearby (0.002 <z< 0.182) LAEs in the COS Legacy Archive Spectroscopic Survey treasury and optical/near-IR spectra of 2.8 <z< 6.7 LAEs in the Multi Unit Spectroscopic-Wide survey, we observe absorption profiles in both redshift regimes. Dividing the sample by volume density shows that the troughs increase in higher-density regions. This trend suggests that the depth of the absorption is dependent on the local density of objects near the LAE, a geometry that is similar to damped Lyαsystems. Simple simulations of Lyαradiative transfer can produce similar troughs due to absorption of light from background sources by Higas surrounding the LAEs.more » « less
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Abstract We describe the ensemble properties of the 1.9 <z< 3.5 Lyman alpha emitters (LAEs) found in the HETDEX survey’s first public data release, HETDEX Public Source Catalog 1. Stacking the low-resolution (R∼ 800) spectra greatly increases the signal-to-noise ratio (S/N), revealing spectral features otherwise hidden by noise, and we show that the stacked spectrum is representative of an average member of the set. The flux-limited, LyαS/N restricted stack of 50,000 HETDEX LAEs shows the ensemble biweightaveragez∼ 2.6 LAE to be a blue (UV continuum slope ∼ −2.4 andE(B – V)< 0.1), moderately bright (MUV∼ −19.7) star-forming galaxy with strong Lyαemission (logLLyα∼ 42.8 andWλ(Lyα) ∼ 114 Å), and potentially significant leakage of ionizing radiation. The rest-frame UV light is dominated by a young, metal-poor stellar population with an average age of 5–15 Myr and metallicity of 0.2–0.3Z⊙.more » « less
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